Man pages for dncR/MLSeq
Machine Learning Interface for RNA-Seq Data
| Available-classifiers | Available classification/regression methods in 'MLSeq' |
| cervical | Cervical cancer data |
| classify | Fitting classification models to sequencing data |
| confusionMat | Accessors for the 'confusionMat' slot. |
| control | Accessors for the 'control' slot. |
| discreteControl | Define controlling parameters for discrete classifiers (NBLDA... |
| discrete.train-class | 'discrete.train' object |
| input | Accessors for the 'inputObject' slot of an 'MLSeq' object |
| isUpdated | Checks if MLSeq object is updated/modified or not. |
| metaData | Accessors for the 'metaData' slot of an 'MLSeq' object |
| method | Accessors for the 'method'. |
| MLSeq-class | 'MLSeq' object |
| MLSeqMetaData-class | 'MLSeqMetaData' object |
| MLSeqModelInfo-class | 'MLSeqModelInfo' object |
| MLSeq-package | Machine learning interface for RNA-Seq data |
| modelInfo | Accessors for the 'modelInfo' slot of an 'MLSeq' object |
| normalization | Accessors for the 'normalization' slot. |
| plot | Plot accuracy results from 'MLSeq' object |
| predict | Extract predictions from 'classify()' object |
| preProcessing | Accessors for the 'preProcessing' slot of an 'MLSeq' object |
| Print method for confusion matrix | |
| ref | Accessors for the 'ref' slot. |
| selectedGenes | Accessors for the 'selectedGenes'. |
| show | Show method for MLSeq objects |
| trained | Accessors for the 'trainedModel' slot. |
| trainParameters | Accessors for the 'trainParameters' slot. |
| transformation | Accessors for the 'transformation' slot. |
| update | Update 'MLSeq' objects returnd from 'classify()' |
| voomControl | Define controlling parameters for voom-based classifiers |
| voom.train-class | 'voom.train' object |
