API for dncR/MLSeq
Machine Learning Interface for RNA-Seq Data

Global functions
.onAttach	Source code
Available-classifiers	Man page
Classify	Source code
ColorDendrogram	Source code
CountDataSet	Source code
FindBestTransform	Source code
GetD	Source code
GetDnb	Source code
GoodnessOfFit	Source code
MLSeq-class	Man page
MLSeq-package	Man page
MLSeqMetaData-class	Man page
MLSeqModelInfo-class	Man page
NullModel	Source code
NullModelTest	Source code
PoissonDistance	Source code
Soft	Source code
availableMethods	Man page Source code
balanced.folds	Source code
calcFactorQuantileGSD	Source code
calcFactorRLEGSD	Source code
calcFactorWeightedGSD	Source code
calcNormFactorsGSD	Source code
cervical	Man page
classify	Man page Source code
classify.continous	Source code
classify.discrete	Source code
classify.voom	Source code
confusionMat	Man page
confusionMat,MLSeq-method	Man page
confusionMat,MLSeqModelInfo-method	Man page
control	Man page
control,MLSeq-method	Man page
control<-	Man page
control<-,MLSeq,list-method	Man page
diag.disc	Source code
discrete.train-class	Man page
discreteControl	Man page Source code
foldIndex	Source code Source code
input	Man page
input,MLSeq-method	Man page
isModified	Man page
isModified,MLSeq-method	Man page
isModified<-	Man page
isModified<-,MLSeq,logical-method	Man page
isUpdated	Man page
isUpdated,MLSeq-method	Man page
isUpdated<-	Man page
isUpdated<-,MLSeq,logical-method	Man page
metaData	Man page
metaData,MLSeq-method	Man page
method	Man page
method,MLSeq-method	Man page
method,MLSeqModelInfo-method	Man page
method<-	Man page
method<-,MLSeq,character-method	Man page
modelDescription	Source code
modelInfo	Man page
modelInfo,MLSeq-method	Man page
normalization	Man page
normalization,MLSeq-method	Man page
normalization,MLSeqModelInfo-method	Man page
normalization<-	Man page
normalization<-,MLSeq,character-method	Man page
permute.rows	Source code
plot	Man page
plot,MLSeq,ANY-method	Man page
plot.MLSeq	Man page Source code
preProcessing	Man page
preProcessing,MLSeq-method	Man page
preProcessing<-	Man page
preProcessing<-,MLSeq,character-method	Man page
predict	Man page
predict,MLSeq-method	Man page
predict.MLSeq	Man page
predict.voomDDA	Source code
predict.voomNSC	Source code
predictClassify	Man page
predictNBLDA	Source code
predictPLDA	Source code
print,confMat-method	Man page
print.confMat	Man page Source code
print.poidist	Source code
printAvailableMethods	Man page Source code
ref	Man page
ref,MLSeq-method	Man page
ref,MLSeqModelInfo-method	Man page
ref<-	Man page
ref<-,MLSeq,character-method	Man page
safe.exp	Source code
se	Source code
selectedGenes	Man page
selectedGenes,MLSeq-method	Man page
show	Man page
show,MLSeq-method	Man page
show,MLSeqMetaData-method	Man page
show,MLSeqModelInfo-method	Man page
show,discrete.train-method	Man page
show,voom.train-method	Man page
show.MLSeq	Man page Source code
show.MLSeqMetaData	Source code
show.MLSeqModelInfo	Source code
show.discrete.train	Source code
show.voom.train	Source code
soft.shrink	Source code
softmax	Source code
trainNBLDA	Source code
trainPLDA	Source code
trainParameters	Man page
trainParameters,MLSeq-method	Man page
trainParameters,MLSeqModelInfo-method	Man page
trained	Man page
trained,MLSeq-method	Man page
trained,MLSeqModelInfo-method	Man page
transformation	Man page
transformation,MLSeq-method	Man page
transformation,MLSeqModelInfo-method	Man page
update	Man page
update,MLSeq-method	Man page
update.MLSeq	Man page Source code
voom.train-class	Man page
voomControl	Man page Source code
voomDDA.train	Source code
voomGSD	Source code
voomNSC.train	Source code
weighted.stats	Source code