taxid_to_name: Converts NCBI taxonomy ID to scientific name
In compbiomed/MetaScope: Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data
View source: R/metascope_blast.R
taxid_to_name R Documentation
Converts NCBI taxonomy ID to scientific name
Description
Converts NCBI taxonomy ID to scientific name
Usage
taxid_to_name(taxids, accession_path)
Arguments
taxids
List of NCBI taxids to convert to scientific name
accession_path
(character) Filepath to NCBI accessions SQL
database. See taxonomzr::prepareDatabase().
Value
Returns a dataframe of blast results for a metascope result
compbiomed/MetaScope documentation built on Jan. 16, 2025, 10:23 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/metascope_blast.R
| taxid_to_name | R Documentation |
Converts NCBI taxonomy ID to scientific name
Description
Converts NCBI taxonomy ID to scientific name
Usage
taxid_to_name(taxids, accession_path)
Arguments
taxids |
List of NCBI taxids to convert to scientific name |
accession_path |
(character) Filepath to NCBI accessions SQL
database. See |
Value
Returns a dataframe of blast results for a metascope result
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.