add_in_taxa_ncbi: Adds in taxa if input used NCBI database
In compbiomed/MetaScope: Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data
View source: R/metascope_blast.R
add_in_taxa_ncbi R Documentation
Adds in taxa if input used NCBI database
Description
Returns MetaScope Table with NCBI taxa in separate columns
Usage
add_in_taxa_ncbi(metascope_id_in, accession, BPPARAM)
Arguments
metascope_id_in
MetaScope ID file with NCBI taxa qnames
BPPARAM
An optional BiocParallelParam instance determining the
parallel back-end to be used during evaluation.
Value
data.frame or tibble of taxonomy information
compbiomed/MetaScope documentation built on Jan. 16, 2025, 10:23 p.m.
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View source: R/metascope_blast.R
| add_in_taxa_ncbi | R Documentation |
Adds in taxa if input used NCBI database
Description
Returns MetaScope Table with NCBI taxa in separate columns
Usage
add_in_taxa_ncbi(metascope_id_in, accession, BPPARAM)
Arguments
metascope_id_in |
MetaScope ID file with NCBI taxa qnames |
BPPARAM |
An optional BiocParallelParam instance determining the parallel back-end to be used during evaluation. |
Value
data.frame or tibble of taxonomy information
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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