hex: Hexamers and Z scores

In caggtaagtat/ModCon: Modifying splice site usage by changing the mRNP code, while maintaining the genetic code

Description

Hexamers and Z scores

Usage

hex

Format

A data frame with columns:

seq

Sequence of the hexamer.

value

ZEI-score of the hexamer from HEXplorer.

first

First codon within the hexamer.

second

Second codon within the hexamer.

first_AA

First encoded amino acid within the hexamer (three lettre code).

second_AA

Second encoded amino acid within the hexamer (three lettre code).

AA

Both encoded amino acid within the hexamer

Examples

 hex

caggtaagtat/ModCon documentation built on March 12, 2021, 4:12 a.m.