pca_phase_plots_fn: Make dimred plots of PCA colored by cell cycle phase.
In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language
pca_phase_plots_fn R Documentation
Make dimred plots of PCA colored by cell cycle phase.
Description
If HVG selection was performed with removal of CC-related genes, list of two plots will be returned -
one with PCA performed on all genes, and the second one without CC-related genes.
Usage
pca_phase_plots_fn(sce_pca)
Arguments
sce_pca
(input target) A SingleCellExperiment object.
Value
A list of one or two ggplot2 objects. Output target: pca_phase_plots
bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.
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| pca_phase_plots_fn | R Documentation |
Make dimred plots of PCA colored by cell cycle phase.
Description
If HVG selection was performed with removal of CC-related genes, list of two plots will be returned - one with PCA performed on all genes, and the second one without CC-related genes.
Usage
pca_phase_plots_fn(sce_pca)
Arguments
sce_pca |
(input target) A |
Value
A list of one or two ggplot2 objects. Output target: pca_phase_plots
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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