calculate_metadata: Calculate metadata for manual cell/spot annotation for...
In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language
View source: R/manual_cell_annotation.R
calculate_metadata R Documentation
Calculate metadata for manual cell/spot annotation for heatmap visualisation.
Description
Calculate metadata for manual cell/spot annotation for heatmap visualisation.
Usage
calculate_metadata(sce, enrichment, clustering)
Arguments
sce
A SingleCellExperiment object
enrichment
precalculated enrichment score for each cell/spot
clustering
A vector of selected clustering used for annotation, inheritated from meta_heatmap plotting
bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/manual_cell_annotation.R
| calculate_metadata | R Documentation |
Calculate metadata for manual cell/spot annotation for heatmap visualisation.
Description
Calculate metadata for manual cell/spot annotation for heatmap visualisation.
Usage
calculate_metadata(sce, enrichment, clustering)
Arguments
sce |
A |
enrichment |
precalculated enrichment score for each cell/spot |
clustering |
A vector of selected clustering used for annotation, inheritated from meta_heatmap plotting |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.