dimred_plots_clustering_fn: Make a dimred plot for each clustering and dimred method.

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Make a dimred plot for each clustering and dimred method.

Description

Make a dimred plot for each clustering and dimred method.

Usage

dimred_plots_clustering_fn(
  sce_dimred,
  dimred_names,
  cluster_df,
  spatial = FALSE,
  out_dir = NULL
)

Arguments

sce_dimred	A SingleCellExperiment object with computed dimreds specified in dimred_names.
dimred_names	A character vector: dimred names to use for plotting.
cluster_df	A tibble.
spatial	A logical vector, TRUE for enable pseudotissue visualization for spatial transcriptomics datasets
out_dir	A character scalar: output directory in which PDF and PNG files will be saved.

Value

A tibble. Output target: dimred_plots_clustering

bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.