generate_dimred_plots_section: Generate a section with dimred plots used in some RMarkdown...

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Generate a section with dimred plots used in some RMarkdown files.

Description

The hierarchy is composed of tabsets:

• Dimred (UMAP, t-SNE, PCA)

  • Dimred plots of selected variables

Usage

generate_dimred_plots_section(
  dimred_plots_other_vars_files,
  selected_markers_plots_files,
  dimred_plots_rel_start = ".",
  selected_markers_files_rel_start = ".",
  main_header = "Dimensionality reduction",
  main_header_level = 1
)

Arguments

dimred_plots_other_vars_files	A tibble.
selected_markers_plots_files	A tibble.
dimred_plots_rel_start, selected_markers_files_rel_start	A character scalar: relative start of path to directory with dimred plots or selected markers. See the Relative links section in create_a_link().
main_header	A character scalar: text of the main header.
main_header_level	A numeric scalar: level of the main header.

Value

Invisibly NULL, Markdown elements are directly printed to stdout.

bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.