condenseRE: Condense a RaggedExperiment to a list of...

In biobenkj/compartmap: Higher-order chromatin domain inference in single samples from methylation arrays and single cells from scRNA-seq and scATAC-seq

Condense a RaggedExperiment to a list of SummarizedExperiments

Description

Condense a RaggedExperiment to a list of SummarizedExperiments

Usage

condenseRE(obj)

Arguments

obj	Input RaggedExperiment

Value

A list of SummarizedExperiments corresponding to the assays in the input

Examples

grl <- GRangesList(
  GRanges(c("A:1-5", "A:4-6", "A:10-15"), score = 1:3),
  GRanges(c("A:1-5", "B:1-3"), score = 4:5)
)
names(grl) <- c("A", "B")
x <- RaggedExperiment(grl)
x.condense <- condenseRE(x)

biobenkj/compartmap documentation built on April 5, 2025, 9:17 a.m.