cleanAssayRows: Remove rows with NAs exceeding a threshold
In biobenkj/compartmap: Higher-order chromatin domain inference in single samples from methylation arrays and single cells from scRNA-seq and scATAC-seq
cleanAssayRows R Documentation
Remove rows with NAs exceeding a threshold
Description
Remove rows with NAs exceeding a threshold
Usage
cleanAssayRows(se, rowmax = 0.5, assay = c("array", "bisulfite"))
Arguments
se
Input SummarizedExperiment object
rowmax
The maximum NAs allowed in a row as a fraction
assay
The type of assay we are working with
Value
A filtered matrix
Examples
if (requireNamespace("minfi", quietly = TRUE)) {
data("array_data_chr14", package = "compartmap")
cleanAssayRows(array.data.chr14, assay = "array")
}
biobenkj/compartmap documentation built on April 5, 2025, 9:17 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| cleanAssayRows | R Documentation |
Remove rows with NAs exceeding a threshold
Description
Remove rows with NAs exceeding a threshold
Usage
cleanAssayRows(se, rowmax = 0.5, assay = c("array", "bisulfite"))
Arguments
se |
Input SummarizedExperiment object |
rowmax |
The maximum NAs allowed in a row as a fraction |
assay |
The type of assay we are working with |
Value
A filtered matrix
Examples
if (requireNamespace("minfi", quietly = TRUE)) {
data("array_data_chr14", package = "compartmap")
cleanAssayRows(array.data.chr14, assay = "array")
}
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.