In antagomir/netresponse: Functional Network Analysis
(ICMg) and
context-specific behavior
(NetResponse)
of interaction networks. ICMg is used to identify community structure
in interaction networks;
Interaction Component Model for Gene Modules
Interaction Component Model (ICMg) can be used to find functional gene
modules from either protein interaction data or from combinations of
protein interaction and gene expression data. Run ICMg and cluster the
nodes:
library(netresponse)
data(osmo)
res <- ICMg.combined.sampler(osmo$ppi, osmo$exp, C=10)
res$comp.memb <- ICMg.get.comp.memberships(osmo$ppi, res)
res$clustering <- apply(res$comp.memb, 2, which.max)
When using the ICMg algorithms, additionally cite Parkkinen et al. (2010).
antagomir/netresponse documentation built on March 30, 2023, 7:24 a.m.
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(ICMg) and context-specific behavior (NetResponse) of interaction networks. ICMg is used to identify community structure in interaction networks;
Interaction Component Model for Gene Modules
Interaction Component Model (ICMg) can be used to find functional gene modules from either protein interaction data or from combinations of protein interaction and gene expression data. Run ICMg and cluster the nodes:
library(netresponse) data(osmo) res <- ICMg.combined.sampler(osmo$ppi, osmo$exp, C=10) res$comp.memb <- ICMg.get.comp.memberships(osmo$ppi, res) res$clustering <- apply(res$comp.memb, 2, which.max)
When using the ICMg algorithms, additionally cite Parkkinen et al. (2010).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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