melissa_encode_dt: Synthetic ENCODE single cell methylation data

In andreaskapou/Melissa: Bayesian clustering and imputationa of single cell methylomes

Description

Small synthetic ENCODE data generated by inferring methylation profiles from bulk ENCODE data, and subsequently generating single cells. It consists of N = 200 cells and M = 100 genomic regions. The data are in the required format for directly running Melissa and are used as a case study for the vignette.

Usage

melissa_encode_dt

Format

A list object containing methylation regions, annotation data and the options used for creating the data. This in general would be the output of the create_melissa_data_obj function. It has the following three objects:

• met: A list containing the methylation data, each element of the list is a different cell.

• anno_region: Corresponding annotation data for each genomic region.

• opts: Parameters/options used to generate the data.

Value

Synthetic ENCODE methylation data

See Also

create_melissa_data_obj

andreaskapou/Melissa documentation built on June 12, 2020, 5:54 p.m.