exprMatrix: Expression data of two genes for 229 individuals
In alussana/AffiXcan: A Functional Approach To Impute Genetically Regulated Expression
Description
Usage
Format
Details
Source
Examples
Description
Toy dataset used in examples to describe affiXcanTrain() function.
Usage
1
Format
An object of class SummarizedExperiment.
Details
The data consist in a SummarizedExperiment object that contains a matrix of
expression values (RPKM) of two randomly chosen genes ("ENSG00000139269.2"
and "ENSG00000256377.1") for 229 individuals of european descent. The data
was retrieved subsetting the RNA-sequencing data of EBV-transformed
lymphocytes from the GEUVADIS public dataset (see 'source')
Source
https://www.ebi.ac.uk/arrayexpress/files/E-GEUV-3/
Examples
1
2
3
library(SummarizedExperiment)
data(exprMatrix)
toyExpressionMatrix <- assays(exprMatrix)$values
alussana/AffiXcan documentation built on Oct. 20, 2020, 12:08 a.m.
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Description Usage Format Details Source Examples
Description
Toy dataset used in examples to describe affiXcanTrain() function.
Usage
1 |
Format
An object of class SummarizedExperiment.
Details
The data consist in a SummarizedExperiment object that contains a matrix of expression values (RPKM) of two randomly chosen genes ("ENSG00000139269.2" and "ENSG00000256377.1") for 229 individuals of european descent. The data was retrieved subsetting the RNA-sequencing data of EBV-transformed lymphocytes from the GEUVADIS public dataset (see 'source')
Source
https://www.ebi.ac.uk/arrayexpress/files/E-GEUV-3/
Examples
1 2 3 | library(SummarizedExperiment)
data(exprMatrix)
toyExpressionMatrix <- assays(exprMatrix)$values
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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