summary_stats_salmon: Get salmon mapping rate for each BioSample
In almeidasilvaf/GEAtlas: Building Expression Atlas from RNA-Seq data
summary_stats_salmon R Documentation
Get salmon mapping rate for each BioSample
Description
Get salmon mapping rate for each BioSample
Usage
summary_stats_salmon(salmondir, biosamples)
Arguments
salmondir
Path to the directory where salmon
output files are.
biosamples
A character vector of BioSample IDs that were
quantified with salmon.
Value
A 2-column data frame with the following variables:
- BioSample
Character, BioSample IDs.
- Mapping_rate
Numeric, mapping rate. Values range from 0 to 100.
Examples
salmondir <- system.file("extdata", package = "bears")
biosamples <- "SAMN02422669"
summary_stats_salmon(salmondir, biosamples)
almeidasilvaf/GEAtlas documentation built on April 14, 2023, 6:58 p.m.
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| summary_stats_salmon | R Documentation |
Get salmon mapping rate for each BioSample
Description
Get salmon mapping rate for each BioSample
Usage
summary_stats_salmon(salmondir, biosamples)
Arguments
salmondir |
Path to the directory where salmon output files are. |
biosamples |
A character vector of BioSample IDs that were quantified with salmon. |
Value
A 2-column data frame with the following variables:
- BioSample
Character, BioSample IDs.
- Mapping_rate
Numeric, mapping rate. Values range from 0 to 100.
Examples
salmondir <- system.file("extdata", package = "bears")
biosamples <- "SAMN02422669"
summary_stats_salmon(salmondir, biosamples)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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