translate_strandedness: Translate library orientation terminology for each program

In almeidasilvaf/GEAtlas: Building Expression Atlas from RNA-Seq data

Translate library orientation terminology for each program

Description

Translate library orientation terminology for each program

Usage

translate_strandedness(orientation = NULL, layout = NULL)

Arguments

orientation	Library orientation, available in the column "Orientation" from the output of infer_strandedness.
layout	Library layout, available in the column "Layout" from the output of create_sample_info.

Value

A list with the following elements:

salmon

salmon library information.

fcounts

featureCounts library information.

kallisto

kallisto library information.

stringtie

StringTie library information.

Examples

data(sample_info)
orientation <- sample_info$Orientation
layout <- sample_info$Layout
strandedness <- translate_strandedness(orientation, layout)

almeidasilvaf/GEAtlas documentation built on April 14, 2023, 6:58 p.m.