Files in Viant-Metabolomics/msPurity
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

.Rbuildignore

.github/.gitignore

.github/workflows/check-bioc.yml

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS

R/all-generics.R R/averaging.R R/combineAnnotations.R R/create-database.R R/createDatabase.R R/flag-filter-remove.R R/iw-norm.R R/matching-algs.R R/meta_extract.R R/msPurity.R R/pcalc.R R/purityA-0-class.R R/purityA-av-spectra.R R/purityA-constructor.R R/purityA-create-msp.R R/purityA-filter-frag-spectra.R R/purityA-frag4feature.R R/purityA-validate.R R/purityD-av-spectra.R R/purityD-class.R R/purityD-constructor.R R/purityD-dims-purity.R R/purityD-fileList.R R/purityD-filterp.R R/purityD-subtract.R R/purityD-writeOut.R R/purityX-class.R R/purityX-constructor.R R/spectral-matching.R R/spectralMatching.R R/splinepurity.R

README.rst

inst/CITATION

inst/extdata/iwqe5.rds

inst/extdata/tests/db/createDatabase_example.sqlite

inst/extdata/tests/db/createDatabase_example_OLD.sqlite

inst/extdata/tests/db/create_database_example.sqlite

inst/extdata/tests/db/metab_compound_subset.sqlite

inst/extdata/tests/external_annotations/beams.tsv

inst/extdata/tests/external_annotations/combined.tsv

inst/extdata/tests/external_annotations/metfrag.tsv

inst/extdata/tests/external_annotations/probmetab.tsv

inst/extdata/tests/external_annotations/sirus_csifingerid.tsv

inst/extdata/tests/msp/all.msp

inst/extdata/tests/msp/all_OLD.msp

inst/extdata/tests/msp/av_all.msp

inst/extdata/tests/msp/av_all_OLD.msp

inst/extdata/tests/msp/av_all_dupmeta.msp

inst/extdata/tests/msp/av_all_dupmeta_OLD.msp

inst/extdata/tests/msp/av_all_include_adducts.msp

inst/extdata/tests/msp/av_inter.msp

inst/extdata/tests/msp/av_inter_OLD.msp

inst/extdata/tests/msp/av_intra.msp

inst/extdata/tests/msp/av_intra_OLD.msp

inst/extdata/tests/msp/max.msp

inst/extdata/tests/msp/max_OLD.msp

inst/extdata/tests/msp/recrdt.msp

inst/extdata/tests/msp/recrdt_OLD.msp

inst/extdata/tests/purityA/10_input_filterflagremove.rds

inst/extdata/tests/purityA/1_purityA_pa.rds

inst/extdata/tests/purityA/1_purityA_pa_OLD.rds

inst/extdata/tests/purityA/2_frag4feature_pa.rds

inst/extdata/tests/purityA/2_frag4feature_pa_OLD.rds

inst/extdata/tests/purityA/3_filterFragSpectra_pa.rds

inst/extdata/tests/purityA/3_filterFragSpectra_pa_OLD.rds

inst/extdata/tests/purityA/4_averageIntraFragSpectra_no_filter_pa.rds

inst/extdata/tests/purityA/4_averageIntraFragSpectra_no_filter_pa_OLD.rds

inst/extdata/tests/purityA/5_averageInterFragSpectra_no_filter_pa.rds

inst/extdata/tests/purityA/5_averageInterFragSpectra_no_filter_pa_OLD.rds

inst/extdata/tests/purityA/6_averageAllFragSpectra_no_filter_pa.rds

inst/extdata/tests/purityA/6_averageAllFragSpectra_no_filter_pa_OLD.rds

inst/extdata/tests/purityA/7_averageIntraFragSpectra_with_filter_pa.rds

inst/extdata/tests/purityA/7_averageIntraFragSpectra_with_filter_pa_OLD.rds

inst/extdata/tests/purityA/8_averageInterFragSpectra_with_filter_pa.rds

inst/extdata/tests/purityA/8_averageInterFragSpectra_with_filter_pa_OLD.rds

inst/extdata/tests/purityA/9_averageAllFragSpectra_with_filter_pa.rds

inst/extdata/tests/purityA/9_averageAllFragSpectra_with_filter_pa_OLD.rds

inst/extdata/tests/purityX/1_purityX_grouped_px.rds

inst/extdata/tests/purityX/1_purityX_single_px.rds

inst/extdata/tests/sm/spectralMatching_result.sqlite

inst/extdata/tests/sm/spectralMatching_result_OLD.sqlite

inst/extdata/tests/sm/spectral_matching_result.sqlite

inst/extdata/tests/xcms/ms_only_xcmsnexp.rds

inst/extdata/tests/xcms/ms_only_xset_OLD.rds

inst/extdata/tests/xcms/msms_only_xcmsnexp.rds

inst/extdata/tests/xcms/msms_only_xset.rds

inst/extdata/tests/xcms/msms_only_xset_OLD.rds

msPurity.Rproj

tests/testthat.R tests/testthat/test.1_pcalc.R tests/testthat/test.2_purityA.R tests/testthat/test.2_purityA_OLD.R tests/testthat/test.3_flagremove.R tests/testthat/test.4_db.R tests/testthat/test.4_db_OLD.R tests/testthat/test.5_sm.R tests/testthat/test.5_sm_OLD.R tests/testthat/test.6_combineAnnotations.R tests/testthat/test.7_purityX.R tests/testthat/test.8_dims.R

vignettes/figure1_analytical_chemistry.jpg

vignettes/figure2_analytical_chemistry.jpg

vignettes/figure3_analytical_chemistry.jpg

vignettes/isolation.png

vignettes/isolation_exp.png

vignettes/msPurity-lcmsms-data-processing-and-spectral-matching-vignette.R vignettes/msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd

vignettes/msPurity-lcmsms-data-processing-and-spectral-matching-vignette.html

vignettes/msPurity-lcmsms-data-processing-and-spectral-matching-vignette.md vignettes/msPurity-spectral-database-vignette.R vignettes/msPurity-spectral-database-vignette.Rmd

vignettes/msPurity-spectral-database-vignette.html

vignettes/msPurity-spectral-database-vignette.md vignettes/msPurity-vignette.R vignettes/msPurity-vignette.Rmd

vignettes/msPurity-vignette.html

vignettes/msPurity.Rproj

vignettes/mspurity.bib

vignettes/spectral-database-schema.html

Viant-Metabolomics/msPurity documentation built on May 13, 2024, 8:23 a.m.

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Viant-Metabolomics/msPurity
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

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Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

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Viant-Metabolomics/msPurity Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

Files in Viant-Metabolomics/msPurity Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

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Viant-Metabolomics/msPurity
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

Files in Viant-Metabolomics/msPurity
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics