make_exp_se: Transform gene expression matrix into a Summarized Experiment...

In TransBioInfoLab/MethReg: Assessing the regulatory potential of DNA methylation regions or sites on gene transcription

Transform gene expression matrix into a Summarized Experiment object

Description

Transform gene expression matrix into a Summarized Experiment object

Usage

make_exp_se(exp, genome = c("hg38", "hg19"), verbose = FALSE)

Arguments

exp	Gene expression matrix with gene expression counts, row as ENSG gene IDS and column as samples
genome	Human genome of reference: hg38 or hg19
verbose	A logical argument indicating if messages output should be provided.

Value

A summarized Experiment object

Examples

gene.exp.chr21.log2 <- get(data("gene.exp.chr21.log2"))
gene.exp.chr21.log2.se <- make_exp_se(gene.exp.chr21.log2)

TransBioInfoLab/MethReg documentation built on July 28, 2023, 9:17 p.m.