filter_genes_zero_expression: Remove genes with gene expression level equal to 0 in a...
In TransBioInfoLab/MethReg: Assessing the regulatory potential of DNA methylation regions or sites on gene transcription
View source: R/filter_by_quantile.R
filter_genes_zero_expression R Documentation
Remove genes with gene expression level equal to 0 in a
substantial percentage of the samples
Description
Remove genes with gene expression level equal to 0 in a
substantial percentage of the samples
Usage
filter_genes_zero_expression(exp, max.samples.percentage = 0.25)
Arguments
exp
Gene expression matrix or SumarizedExperiment object
max.samples.percentage
Max percentage of samples with gene
expression as 0, for genes to be selected.
If max.samples.percentage 100, remove genes with 0 for 100% samples.
If max.samples.percentage 25, remove genes with 0 for more
than 25% of the samples.
Value
A subset of the original matrix only with the rows
passing the filter threshold.
TransBioInfoLab/MethReg documentation built on July 28, 2023, 9:17 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/filter_by_quantile.R
| filter_genes_zero_expression | R Documentation |
Remove genes with gene expression level equal to 0 in a substantial percentage of the samples
Description
Remove genes with gene expression level equal to 0 in a substantial percentage of the samples
Usage
filter_genes_zero_expression(exp, max.samples.percentage = 0.25)
Arguments
exp |
Gene expression matrix or SumarizedExperiment object |
max.samples.percentage |
Max percentage of samples with gene expression as 0, for genes to be selected. If max.samples.percentage 100, remove genes with 0 for 100% samples. If max.samples.percentage 25, remove genes with 0 for more than 25% of the samples. |
Value
A subset of the original matrix only with the rows passing the filter threshold.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.