Files in TransBioInfoLab/MethReg

Assessing the regulatory potential of DNA methylation regions or sites on gene transcription

LICENSE.md NEWS.md R/MethReg.R R/cor_dnam_target_gene.R R/cor_tf_target_gene.R R/create_triplet_distance_based.R R/create_triplet_regulon_based.R R/filter_by_quantile.R R/get_human_tfs.R R/get_promoter_avg.R R/get_region_target_gene.R R/get_residuals.R R/get_tf_in_region.R R/interaction_model.R R/methReg_analysis.R R/multiple_testing_correction.R R/plot_interaction_model.R R/plot_stratified_model.R R/regulons.R R/remap2022.R R/stratified_model.R R/utils.R README.Rmd README.md man/MethReg.Rd man/clinical.Rd man/cor_dnam_target_gene.Rd man/cor_tf_target_gene.Rd man/create_triplet_distance_based.Rd man/create_triplet_regulon_based.Rd man/dna.met.chr21.Rd man/filter_dnam_by_quant_diff.Rd man/filter_exp_by_quant_mean_FC.Rd man/filter_genes_zero_expression.Rd man/gene.exp.chr21.log2.Rd man/get_human_tfs.Rd man/get_met_probes_info.Rd man/get_promoter_avg.Rd man/get_region_target_gene.Rd man/get_residuals.Rd man/get_tf_ES.Rd man/get_tf_in_region.Rd man/interaction_model.Rd man/make_dnam_se.Rd man/make_exp_se.Rd man/make_granges_from_names.Rd man/make_names_from_granges.Rd man/methReg_analysis.Rd man/plot_interaction_model.Rd man/plot_stratified_model.Rd man/readRemap2022.Rd man/stratified_model.Rd tests/testthat.R tests/testthat/test-classes.R tests/testthat/test-cor_dnam_target_gene.R tests/testthat/test-create_triplet_distance_based.R tests/testthat/test-filter_by_quantile.R tests/testthat/test-get_human_tfs.R tests/testthat/test-get_promoter_avg.R tests/testthat/test-get_region_target_gene.R tests/testthat/test-get_residuals.R tests/testthat/test-get_tf_in_region.R tests/testthat/test-interaction_model.R tests/testthat/test-plot_interaction_model.R tests/testthat/test-plot_stratified_model.R tests/testthat/test-stratified_model.R tests/testthat/test-utils.R vignettes/MethReg.Rmd