API for TransBioInfoLab/MethReg
Assessing the regulatory potential of DNA methylation regions or sites on gene transcription
| Global functions | |
|---|---|
| MethReg | Man page |
| add_percent_zero_q1_q4 | Source code |
| calculate_IQR | Source code |
| calculate_fdr_adjustment | Source code |
| calculate_fdr_per_region_adjustment | Source code |
| calculate_mean_q4_minus_mean_q1 | Source code |
| calculate_stage_wise_adjustment | Source code |
| check_data | Source code |
| check_package | Source code |
| clinical | Man page |
| cor_dnam_target_gene | Man page Source code |
| cor_tf_target_gene | Man page Source code |
| create_triplet_ID | Source code |
| create_triplet_distance_based | Man page Source code |
| create_triplet_regulon_based | Man page Source code |
| dna.met.chr21 | Man page |
| filter_dnam_by_quant_diff | Man page Source code |
| filter_exp_by_quant_mean_FC | Man page Source code |
| filter_genes_zero_expression | Man page Source code |
| filter_genes_zero_expression_all_samples | Source code |
| gene.exp.chr21.log2 | Man page |
| get_DMTD | Source code |
| get_DMTD_target_tf | Source code |
| get_distance_region_target | Source code |
| get_gene_information | Source code |
| get_gene_information_biomart | Source code |
| get_human_tfs | Man page Source code |
| get_lambert_tf | Source code |
| get_met_probes_info | Man page Source code |
| get_plot_results | Source code |
| get_promoter_avg | Man page Source code |
| get_promoter_regions | Source code |
| get_region_target_gene | Man page Source code |
| get_region_target_gene_by_promoter_overlap | Source code |
| get_region_target_gene_closest_tss | Source code |
| get_region_target_gene_nearby.genes | Source code |
| get_region_target_gene_nearby.genes_aux | Source code |
| get_region_target_gene_window | Source code |
| get_regulon_dorothea | Source code |
| get_residuals | Man page Source code |
| get_table_plot | Source code |
| get_table_stratified_plot | Source code |
| get_target_tss_to_region_distance | Source code |
| get_tf_ES | Man page Source code |
| get_tf_dnam_classification | Source code |
| get_tf_in_region | Man page Source code |
| get_triplet_data | Source code |
| interaction_all_model_no_results | Source code |
| interaction_model | Man page Source code |
| interaction_model_output | Source code |
| interaction_model_quant_rlm | Source code |
| interaction_model_quant_zeroinfl | Source code |
| interaction_model_rlm | Source code |
| interaction_model_zeroinfl | Source code |
| interaction_quant_model_no_results | Source code |
| make_dnam_se | Man page Source code |
| make_exp_se | Man page Source code |
| make_granges_from_names | Man page Source code |
| make_names_from_granges | Man page Source code |
| map_ensg_to_region | Source code |
| map_ensg_to_symbol | Source code |
| map_probes_to_regions | Source code |
| map_symbol_to_ensg | Source code |
| methReg_analysis | Man page Source code |
| plot_interaction_model | Man page Source code |
| plot_stratified_model | Man page Source code |
| readRemap2022 | Man page Source code |
| register_cores | Source code |
| stage_wise_adjustment | Source code |
| stratified_model | Man page Source code |
| stratified_model_aux | Source code |
| stratified_model_aux_no_results | Source code |
| stratified_model_results | Source code |
| subset_by_non_promoter_regions | Source code |
| subset_by_promoter_regions | Source code |
