userobj: GenomicRanges object generation

In TheJacksonLaboratory/epihet: Determining Epigenetic Heterogeneity from Bisulfite Sequencing Data

Description

generate GenomicRanges object for DEH loci

Usage

userobj(data)

Arguments

data	a data frame containing the chromosome number, loci and strand information of DEH loci generated from diffHet() function.

Value

A GenomicRanges object

Examples

data<-data.frame(chromosome=c('chr1','chr1','chr1'),
loci=c('6480531:6480554:6480561:6480565','6647655:6647696:6647701:6647705',
'7130155:7130172:7130179:7130188'),
strand=c('+','-','+'),stringsAsFactors = FALSE)
userobj(data)

TheJacksonLaboratory/epihet documentation built on Dec. 22, 2020, 1:10 p.m.