data: example data background

In TheJacksonLaboratory/epihet: Determining Epigenetic Heterogeneity from Bisulfite Sequencing Data

Description

background: A data frame containing 31995 elements as background used for pathway enrichment analysis

datTraits: Clinical traits containing OS,EFS,age

DEG: Differentially expressed genes compared CEBPA-sil vs.normal

DEH: DEH loci

diffhetmatrix: A differentially heterogeneity matrix

moduledm: Module information for CEBPA-dm mutation samples

modulesil: Module information for CEBPA-sil mutation samples

promoter: The promoter region annotation file

sharedmatrix: Epigenetic heterogeneity values for 6 patients on DEH loci

myValues: customized epigenetic diversity metric for 4 samples

Usage

data(background)
background

data(datTraits)
datTraits

data(DEG)
DEG

data(DEH)
DEH

data(diffhetmatrix)
diffhetmatrix

data(moduledm)
moduledm

data(modulesil)
modulesil

data(promoter)
promoter

data(sharedmatrix)
sharedmatrix

data(myValues)
myValues

Format

background: A data frame with 31995 rows and 1 variables:

gene

background gene list

Value

A data frame

A large GRanges object

TheJacksonLaboratory/epihet documentation built on Dec. 22, 2020, 1:10 p.m.