jaccard: Jaccard score calculation between modules from two subtypes.

In TheJacksonLaboratory/epihet: Determining Epigenetic Heterogeneity from Bisulfite Sequencing Data

Description

Jaccard score calculation based on the common genes in two modules from two subtypes.

Usage

jaccard(module.subtype1, module.subtype2)

Arguments

module.subtype1	a data frame generated from the epiNetwork() function. The module information of subtype1, the first column is module nodes, the second column is module label, the third column is module color.
module.subtype2	a data frame generated from the epiNetwork() function. The module information of subtype1, the first column is module nodes, the second column is module label, the third column is module color.

Value

A matrix containing Jaccard scores.

Examples

data(modulesil)
data(moduledm)
jaccard.matrix <- jaccard(modulesil, moduledm)

TheJacksonLaboratory/epihet documentation built on Dec. 22, 2020, 1:10 p.m.