caliblist_advise_lipidomics: caliblist_advise_lipidomics

In ShinyFabio/ADViSELipidomics: Shinyapp for the acquisition and the analysis of lipidomics data

caliblist_advise_lipidomics

Description

caliblist_advise_lipidomics is the function for creation of the calibration data (concentration and area).

Usage

caliblist_advise_lipidomics(
  out,
  info,
  calibration_path,
  calibration_targetfile
)

Arguments

out	List. It is the result from the filter_advise_lipidomics function.
info	a string that tells if it's the deuterated or nonlabeled calibration
calibration_path	Character string. It should be the folder in which calibration files are located, already stored in the list 'out' (as out$folders$calibration_path).
calibration_targetfile	Character string. It is the calibration target file.

Details

The first part of the calibration step creates a list of calibration information from the calibration target files. This first part should be applied both to deuterated files and to non-labeled files. The creation of the final calibration matrix is performed outside the function. The calibration matrix has the correspondence between concentration and area for each internal standard lipid species.

Value

A calibration matrix

Note

Last change 20/01/2022

ShinyFabio/ADViSELipidomics documentation built on March 21, 2023, 7:30 a.m.