sumexp_advise_lipidomics: sumexp_advise_lipidomics

In ShinyFabio/ADViSELipidomics: Shinyapp for the acquisition and the analysis of lipidomics data

sumexp_advise_lipidomics

Description

sumexp_advise_lipidomics is the function for the creation of the SummarizedExperiment object from concentration matrix, target file information, and metadata (already stored in 'out' list)

Usage

sumexp_advise_lipidomics(out)

Arguments

out	List. It is the result from the recovery_advise_lipidomics function.

Details

The conversion step creates the SummarizeExperiment object from the concentration matrix (i.e. the feature matrix), the target file data, and laboratory metadata. Moreover, lipid features are parsed from the name of the lipid species. Two SummarizedExperiment objects are stored: one with each single replicate, one with replicates averaged per sample.

Value

res: a list with results from the recovery step, updated with two SummerizedExperiment objects with concentration matrix, target file information, lipid features and metadata.

Note

Last change 17/12/2021

ShinyFabio/ADViSELipidomics documentation built on March 21, 2023, 7:30 a.m.