statsUMI4C: Statistics UMI4C

In Pasquali-lab/UMI4Cats: UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data

Statistics UMI4C

Description

Creates a stats summary file and generates a summary plot describing statistics for processed UMI-4C samples.

Usage

statsUMI4C(wk_dir)

Arguments

wk_dir

Working directory where to save the outputs generated by the UMI-4c analysis.

Value

Returns a plot summarizing the main statistics of the processed UMI-4C experiments found in wk_dir. Also, writes a file named stats_summary.txt in wk_dir/logs that summarizes all the values represented in the plot.

Examples

statsUMI4C(wk_dir = system.file("extdata", "CIITA",
    package = "UMI4Cats"
))
stats <- read.delim(system.file("extdata", "CIITA", "logs", "stats_summary.txt",
    package = "UMI4Cats"
))
head(stats)

Pasquali-lab/UMI4Cats documentation built on Nov. 3, 2024, 3:10 p.m.