dot-getSummaryBam: Summarize BAM file
In Pasquali-lab/UMI4Cats: UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data
.getSummaryBam R Documentation
Summarize BAM file
Description
Get summary of interesting bam statistics
Usage
.getSummaryBam(bam_file, mapped = TRUE, secondary = FALSE)
Arguments
bam_file
Path for the bam file.
mapped
Logical indicating whether to extract mapped reads.
secondary
Logical indicating whether to extract secondary aligned
reads.
Value
Returns a numeric containing the number of reads in bam_file
that has the specified mapped and secondary status.
Pasquali-lab/UMI4Cats documentation built on Nov. 3, 2024, 3:10 p.m.
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| .getSummaryBam | R Documentation |
Summarize BAM file
Description
Get summary of interesting bam statistics
Usage
.getSummaryBam(bam_file, mapped = TRUE, secondary = FALSE)
Arguments
bam_file |
Path for the bam file. |
mapped |
Logical indicating whether to extract mapped reads. |
secondary |
Logical indicating whether to extract secondary aligned reads. |
Value
Returns a numeric containing the number of reads in bam_file
that has the specified mapped and secondary status.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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