downloadUMI4CexampleData: Download UMI4Cats example datasets

In Pasquali-lab/UMI4Cats: UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data

Download UMI4Cats example datasets

Description

Downloads the required UMI4Cats example datasets.

Usage

downloadUMI4CexampleData(out_dir = tempdir(), verbose = TRUE, reduced = FALSE)

Arguments

out_dir	Output directory for the datasets, defaults to tempdir().
verbose	Whether to print verbose messages or not. Default: TRUE.
reduced	Whether to use a reduced dataset to make test functions run faster.

Value

It creates the output_dir with the example UMI-4C files used by the vignette and examples. Takes advantage of the BiocFileCache package to make sure that the file has not been previously downloaded by the user.

Examples

if (interactive()) {
 # Using reduced data data to make example faster.
# Remove reduced=TRUE or set to FALSE to
# download the full dataset.

path <- downloadUMI4CexampleData(reduced = TRUE)
}

Pasquali-lab/UMI4Cats documentation built on Nov. 3, 2024, 3:10 p.m.