plot_layered_gviz: Plot a Layered Gviz Figure

In NElnour/3dannotator: Classification of genome motifs or features to TADs

Description

Plot the classified motifs, along with the ideogram of the chromosome of interest and and genome axis.

Usage

plot_layered_gviz(antrack, gen, from = 1, to = 1e+06)

Arguments

antrack	A classified annotation track obtained with classifiedAnnotationTrack.
gen	A named character containing genome of interest
from	An optional integer value of start of viewing window.
to	An optional integer value of end of viewing window.

Examples

## Not run: 
data("A549ChromLoops")
data("matchedMotifs")
classify(matchedMotifs, A549ChromLoops)
gen <- c("mm10")
names(gen) <- "chr18"
antrack <- classifiedAnnotationTrack("./BEDs/H3K9me3.bed", gen)
plot_layered_gviz(antrack, gen)

## End(Not run)

NElnour/3dannotator documentation built on Dec. 12, 2019, 12:55 a.m.