A549ChromLoops: Predicted chromsome loops in A549's chromsome 18
In NElnour/3dannotator: Classification of genome motifs or features to TADs
Description
Usage
Format
Source
References
Description
A subset 216-by-3 dataframe containing predicted and Peackahu-merged chromatin loops in chromsome 18 of A549 cells.
Usage
1
Format
A dataframewith 216 rows and 3 columns:
- chr
chromosome 18
- start
chromatin loops' start coordinates
- stop
chromatin loops' end coordinates
Source
http://promoter.bx.psu.edu/hi-c/publications.html
References
Salameh TJ, Wang X, Song F, Zhang B, Wright SM, Khunsriraksakul C, Yue F. (2019) A supervised learning framework for chromatin loop detection in genome-wide contact maps. biorXiv. doi: https://doi.org/10.1101/739698
NElnour/3dannotator documentation built on Dec. 12, 2019, 12:55 a.m.
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Description Usage Format Source References
Description
A subset 216-by-3 dataframe containing predicted and Peackahu-merged chromatin loops in chromsome 18 of A549 cells.
Usage
1 |
Format
A dataframewith 216 rows and 3 columns:
- chr
chromosome 18
- start
chromatin loops' start coordinates
- stop
chromatin loops' end coordinates
Source
http://promoter.bx.psu.edu/hi-c/publications.html
References
Salameh TJ, Wang X, Song F, Zhang B, Wright SM, Khunsriraksakul C, Yue F. (2019) A supervised learning framework for chromatin loop detection in genome-wide contact maps. biorXiv. doi: https://doi.org/10.1101/739698
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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