Description Usage Arguments Value Examples
View source: R/annotation_visualize.R
This function returns an annotated GeneRegionTrack that can be plotted alone or layered with other Gvix/ggbio tracks.
1 | classifiedAnnotationTrack(motif_bed, gen, thresh = 0)
|
motif_bed |
A string of the full path to the BED file containing the classified motifs |
gen |
A named character containing the chromosome name |
thresh |
An optional numeric value denoting the threshold of significance. Motifs with membership scores greater than or equal to thresh will be returned. |
A Formal Class GeneRegionTrack for enriched motif with GRanges corresponding to motif's genomic ranges,
1 2 3 4 5 6 7 8 9 | ## Not run:
data("A549ChromLoops")
data("matchedMotifs")
classify(matchedMotifs, A549ChromLoops)
gen <- c("mm10")
names(gen) <- "chr18"
antrack <- classifiedAnnotationTrack("./BEDs/H3K9me3.bed", gen)
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.