extractTyping: Extract the HLA typing string from one line of aligment
In NCBI-Hackathons/HLAClustRView: HLA typing clustering and visualization based on specific similarity metrics
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Extract the HLA typing string from a character string
containing one line of alignment
Usage
1
extractTyping(seq, endPos)
Arguments
seq
A character string contening the sequence.
endPos
A integer fixing the end of the introduction
section of the sequence.
Value
a character string containing the HLA type of a empty
character string
Author(s)
Pascal Belleau, Astrid Deschenes
Examples
1
2
3
4
5
## One line of aligment
sequence <- " DOB*01:01:01:01 MGSGWV PWVVALLVNL TRLDSSMTQG"
## Extract HLA type
HLAClustRView:::extractTyping(seq=sequence, endPos=20)
NCBI-Hackathons/HLAClustRView documentation built on Nov. 22, 2019, 6:11 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Extract the HLA typing string from a character string containing one line of alignment
Usage
1 | extractTyping(seq, endPos)
|
Arguments
seq |
A |
endPos |
A |
Value
a character string containing the HLA type of a empty
character string
Author(s)
Pascal Belleau, Astrid Deschenes
Examples
1 2 3 4 5 | ## One line of aligment
sequence <- " DOB*01:01:01:01 MGSGWV PWVVALLVNL TRLDSSMTQG"
## Extract HLA type
HLAClustRView:::extractTyping(seq=sequence, endPos=20)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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