extractRef: Process the line contening the reference sequence
In NCBI-Hackathons/HLAClustRView: HLA typing clustering and visualization based on specific similarity metrics
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Extract the information about the reference sequence.
Usage
1
extractRef(seq, startPos)
Arguments
seq
A character string contening the reference sequence.
startPos
A integer corresponding to the position in the string
where the sequence is starting.
Value
A list with two entries. The first is refSeq which is
containing the sequence of the reference. The second is seqDiff is a
string representing the alignment format for the current sequence.
Author(s)
Pascal Belleau, Astrid Deschenes
Examples
1
2
3
4
5
## String with the sequence information
sequence <- " DOB*01:01:01:01 MGSGWV PWVVALLVNL TRLDSSMTQG TDSPEDFVIQ"
## Extract sequence information
HLAClustRView:::extractRef(seq=sequence, startPos=20)
NCBI-Hackathons/HLAClustRView documentation built on Nov. 22, 2019, 6:11 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
Extract the information about the reference sequence.
Usage
1 | extractRef(seq, startPos)
|
Arguments
seq |
A |
startPos |
A |
Value
A list with two entries. The first is refSeq which is
containing the sequence of the reference. The second is seqDiff is a
string representing the alignment format for the current sequence.
Author(s)
Pascal Belleau, Astrid Deschenes
Examples
1 2 3 4 5 | ## String with the sequence information
sequence <- " DOB*01:01:01:01 MGSGWV PWVVALLVNL TRLDSSMTQG TDSPEDFVIQ"
## Extract sequence information
HLAClustRView:::extractRef(seq=sequence, startPos=20)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.