extractSeq: Process the line containing the alignment to the reference
In NCBI-Hackathons/HLAClustRView: HLA typing clustering and visualization based on specific similarity metrics
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Extract the information about the alignment compared to the
reference sequence.
Usage
1
extractSeq(seq, startPos)
Arguments
seq
A character string containing the alignment sequence.
startPos
A integer corresponding to the position in the
character string where the sequence is starting.
Value
A character string representing the aligment sequence
compared to the reference sequence.
Author(s)
Pascal Belleau, Astrid Deschenes
Examples
1
2
3
4
5
## Define a alignment sequence string
sequence <- " DOB*01:01:01:02 ------ ---------- ---------- "
## Extract the alignment section
HLAClustRView:::extractSeq(seq=sequence, startPos=20)
NCBI-Hackathons/HLAClustRView documentation built on Nov. 22, 2019, 6:11 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Extract the information about the alignment compared to the reference sequence.
Usage
1 | extractSeq(seq, startPos)
|
Arguments
seq |
A |
startPos |
A |
Value
A character string representing the aligment sequence
compared to the reference sequence.
Author(s)
Pascal Belleau, Astrid Deschenes
Examples
1 2 3 4 5 | ## Define a alignment sequence string
sequence <- " DOB*01:01:01:02 ------ ---------- ---------- "
## Extract the alignment section
HLAClustRView:::extractSeq(seq=sequence, startPos=20)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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