PWidentallprotssub: Internal subfunction for all protein pathway identification.
In MarenS2/pwOmics_maren: Pathway-based data integration of omics data
Description
Usage
Arguments
Value
View source: R/pwOmics_helper_functions.R
Description
Internal subfunction for all protein pathway identification.
Usage
1
PWidentallprotssub(data_omics, genelists, genelist_ind, datab)
Arguments
data_omics
OmicsData object.
genelists
lists of genelists from chosen pathway databases
genelist_ind
integer specifying pathway database genelist matching;
1 = biocarta, 2 = kegg, 3 = nci, 4 = reactome.
datab
character vector indicating database name for message.
Value
OmicsData object with identified pathways for each protein.
MarenS2/pwOmics_maren documentation built on May 6, 2019, 3:27 p.m.
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Description Usage Arguments Value
View source: R/pwOmics_helper_functions.R
Description
Internal subfunction for all protein pathway identification.
Usage
1 | PWidentallprotssub(data_omics, genelists, genelist_ind, datab)
|
Arguments
data_omics |
OmicsData object. |
genelists |
lists of genelists from chosen pathway databases |
genelist_ind |
integer specifying pathway database genelist matching; 1 = biocarta, 2 = kegg, 3 = nci, 4 = reactome. |
datab |
character vector indicating database name for message. |
Value
OmicsData object with identified pathways for each protein.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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