getOmicsallGeneIDs: Get all gene IDs.

In MarenS2/pwOmics_maren: Pathway-based data integration of omics data

Description

This function returns the gene IDs of all genes (transcripts) measured.

Usage

getOmicsallGeneIDs(data_omics)

Arguments

data_omics

OmicsData object.

Value

all gene IDs.

Examples

data(OmicsExampleData)
data_omics = readOmics(tp_prots = c(0.25, 1, 4, 8, 13, 18, 24), 
tp_genes = c(1, 4, 8, 13, 18, 24), OmicsExampleData,
PWdatabase = c("biocarta", "kegg", "nci", "reactome"), 
TFtargetdatabase = c("userspec"))
getOmicsallGeneIDs(data_omics)

MarenS2/pwOmics_maren documentation built on May 6, 2019, 3:27 p.m.