adjustmentBaalPlot: Method adjustmentBaalPlot
In InesdeSantiago/align_parser: BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Method adjustmentBaalPlot
Produces a density plot of the distribution of allelic ratios (REF/TOTAL) before and after BaalChIP adjustment for RM and RAF biases.
Usage
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adjustmentBaalPlot(.Object, col = c("green3", "gray50"))
## S4 method for signature 'BaalChIP'
adjustmentBaalPlot(.Object, col = c("green3", "gray50"))
Arguments
.Object
An object of the BaalChIP class.
col
A character vector indicating the colours for the density plot ( default is c( 'green3','gray50') ).
Value
A plot
Author(s)
Ines de Santiago
See Also
Examples
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data('BaalObject')
adjustmentBaalPlot(BaalObject)
adjustmentBaalPlot(BaalObject, col=c('blue','pink'))
InesdeSantiago/align_parser documentation built on March 21, 2019, 12:06 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Method adjustmentBaalPlot
Produces a density plot of the distribution of allelic ratios (REF/TOTAL) before and after BaalChIP adjustment for RM and RAF biases.
Usage
1 2 3 4 | adjustmentBaalPlot(.Object, col = c("green3", "gray50"))
## S4 method for signature 'BaalChIP'
adjustmentBaalPlot(.Object, col = c("green3", "gray50"))
|
Arguments
.Object |
An object of the |
col |
A character vector indicating the colours for the density plot ( default is c( 'green3','gray50') ). |
Value
A plot
Author(s)
Ines de Santiago
See Also
Examples
1 2 3 | data('BaalObject')
adjustmentBaalPlot(BaalObject)
adjustmentBaalPlot(BaalObject, col=c('blue','pink'))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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