pickrell2011cov1_hg19: Genomic regions of collapsed repeats
In InesdeSantiago/align_parser: BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
Description
Format
Author(s)
Source
References
Description
A GRanges object containing collapsed repeat regions at the 0.1% threshold (hg19 reference).
Used as 'RegionsToFilter' within the QCfilter function so that variants overlapping these regions will be removed.
Format
A GRanges object of 34359 ranges.
Author(s)
Ines de Santiago ines.desantiago@cruk.cam.ac.uk
Source
File available as supplementary data: Pickrell2011_seq.cov1.bed (http://www.ncbi.nlm.nih.gov/pubmed/21690102)
References
Pickrell et al., 2011 (http://www.ncbi.nlm.nih.gov/pubmed/21690102)
InesdeSantiago/align_parser documentation built on March 21, 2019, 12:06 a.m.
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Description Format Author(s) Source References
Description
A GRanges object containing collapsed repeat regions at the 0.1% threshold (hg19 reference). Used as 'RegionsToFilter' within the QCfilter function so that variants overlapping these regions will be removed.
Format
A GRanges object of 34359 ranges.
Author(s)
Ines de Santiago ines.desantiago@cruk.cam.ac.uk
Source
File available as supplementary data: Pickrell2011_seq.cov1.bed (http://www.ncbi.nlm.nih.gov/pubmed/21690102)
References
Pickrell et al., 2011 (http://www.ncbi.nlm.nih.gov/pubmed/21690102)
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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