mock_mgF: Example mgFeatures class object
In HCBravoLab/metagenomeFeatures: Exploration of marker-gene sequence taxonomic annotations
Description
Usage
Format
Details
Source
Examples
Description
Example mgFeatures-class object generated using the
annotateFeatures MgDb-class method. The dataset contains
the OTU ids and Greengenes database version 13.5 ids. Specifically, the OTU
centers came from a mock community dataset from the study Bokulich et al.
2013, the OTU ids were extracted from a biom file downloaded from QIITA
(https://qiita.ucsd.edu).
Usage
1
Format
mgFeatures
Details
Bokulich, Nicholas A., et al. "Quality-filtering vastly improves diversity
estimates from Illumina amplicon sequencing." Nature methods 10.1 (2013):
57-59.
Source
Examples
1
HCBravoLab/metagenomeFeatures documentation built on Feb. 14, 2020, 12:42 a.m.
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Description Usage Format Details Source Examples
Description
Example mgFeatures-class object generated using the annotateFeatures MgDb-class method. The dataset contains the OTU ids and Greengenes database version 13.5 ids. Specifically, the OTU centers came from a mock community dataset from the study Bokulich et al. 2013, the OTU ids were extracted from a biom file downloaded from QIITA (https://qiita.ucsd.edu).
Usage
1 |
Format
mgFeatures
Details
Bokulich, Nicholas A., et al. "Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing." Nature methods 10.1 (2013): 57-59.
Source
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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