make_mgdb_sqlite: make_mgdb_sqlite
In HCBravoLab/metagenomeFeatures: Exploration of marker-gene sequence taxonomic annotations
Description
Usage
Arguments
Value
Examples
Description
make_mgdb_sqlite
Usage
1
make_mgdb_sqlite(db_name, db_file, taxa_tbl, seqs)
Arguments
db_name
reference database name
db_file
file path for sqlite database
taxa_tbl
data frame with database taxonomy data
seqs
database sequences, path to fasta file or DNAStringSet object
Value
writes SQLite file
Examples
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## Not run:
make_mgdb_sqlite(db_name = "greengenes13.8_85",
db_file = db_file,
taxa_tbl = taxa_tbl,
seqs = seqs)
## End(Not run)
HCBravoLab/metagenomeFeatures documentation built on Feb. 14, 2020, 12:42 a.m.
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Description Usage Arguments Value Examples
Description
make_mgdb_sqlite
Usage
1 | make_mgdb_sqlite(db_name, db_file, taxa_tbl, seqs)
|
Arguments
db_name |
reference database name |
db_file |
file path for sqlite database |
taxa_tbl |
data frame with database taxonomy data |
seqs |
database sequences, path to fasta file or DNAStringSet object |
Value
writes SQLite file
Examples
1 2 3 4 5 6 7 | ## Not run:
make_mgdb_sqlite(db_name = "greengenes13.8_85",
db_file = db_file,
taxa_tbl = taxa_tbl,
seqs = seqs)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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