annotateFeatures-MgDb-method: Annotating metagenome data with taxonomic information
In HCBravoLab/metagenomeFeatures: Exploration of marker-gene sequence taxonomic annotations
Description
Usage
Arguments
Value
Examples
Description
This method is used to create a mgFeatures class object
Usage
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annotateFeatures(mgdb, ...)
## S4 method for signature 'MgDb'
annotateFeatures(mgdb, query)
Arguments
mgdb
MgDb class object
...
additional arguments passed to select function
query
A data frame with experimental data to annotate with taxonomic
information, must include column named "Key" with databse ids. Or a vector
of database Keys of entries to include in mgFeatures-class object.
Value
mgFeatures-class object
Examples
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## MgDb with mock community ids
gg85 <- get_gg13.8_85MgDb()
## generating mgFeatures object
data(mock_query_df)
mock_mgF <- annotateFeatures(gg85, mock_query_df)
HCBravoLab/metagenomeFeatures documentation built on Feb. 14, 2020, 12:42 a.m.
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Description Usage Arguments Value Examples
Description
This method is used to create a mgFeatures class object
Usage
1 2 3 4 | annotateFeatures(mgdb, ...)
## S4 method for signature 'MgDb'
annotateFeatures(mgdb, query)
|
Arguments
mgdb |
MgDb class object |
... |
additional arguments passed to select function |
query |
A data frame with experimental data to annotate with taxonomic information, must include column named "Key" with databse ids. Or a vector of database Keys of entries to include in mgFeatures-class object. |
Value
mgFeatures-class object
Examples
1 2 3 4 5 | ## MgDb with mock community ids
gg85 <- get_gg13.8_85MgDb()
## generating mgFeatures object
data(mock_query_df)
mock_mgF <- annotateFeatures(gg85, mock_query_df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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