volcano: Volcano plot of splicing events.

In DiogoVeiga/maser: Mapping Alternative Splicing Events to pRoteins

Description

Volcano plot of splicing events.

Usage

volcano(events, type = c("A3SS", "A5SS", "SE", "RI", "MXE"), fdr = 0.05,
  deltaPSI = 0.1)

Arguments

events	a maser object.
type	character indicating splice type. Possible values are c("A3SS", "A5SS", "SE", "RI", "MXE")
fdr	numeric, FDR (False Discovery Rate) cutoff.
deltaPSI	numeric, absolute minimum PSI (Percent spliced-in) change

Value

a ggplot object.

Examples

path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
hypoxia_filt <- filterByCoverage(hypoxia, avg_reads = 5)
volcano(hypoxia_filt, type = "SE")

DiogoVeiga/maser documentation built on Feb. 10, 2022, 10:10 a.m.