granges-Maser-method: Retrieve genomic ranges of splicing events from a maser...

In DiogoVeiga/maser: Mapping Alternative Splicing Events to pRoteins

Description

Retrieve genomic ranges of splicing events from a maser object.

Usage

## S4 method for signature 'Maser'
granges(x, type = c("A3SS", "A5SS", "SE", "RI", "MXE"), ...)

Arguments

x	a maser object.
type	a character indicating the splice type. Possible values are c("A3SS", "A5SS", "SE", "RI", "MXE").
...	additional arguments.

Value

a GRangesList.

Examples

path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
head(granges(hypoxia, type = "SE"))

DiogoVeiga/maser documentation built on Feb. 10, 2022, 10:10 a.m.