display: Visualization of splicing events annotation using an...

In DiogoVeiga/maser: Mapping Alternative Splicing Events to pRoteins

Description

Visualization of splicing events annotation using an interactive data table.

Usage

display(events, type = c("A3SS", "A5SS", "SE", "RI", "MXE"))

Arguments

events	a maser object.
type	character indicating splice type. Possible values are c("A3SS", "A5SS", "SE", "RI", "MXE")

Value

a datatables object.

Examples

path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
hypoxia_filt <- filterByCoverage(hypoxia, avg_reads = 5)
hypoxia_top <- topEvents(hypoxia_filt)
display(hypoxia_top, type = "SE")

DiogoVeiga/maser documentation built on Feb. 10, 2022, 10:10 a.m.