rawExample.m: Raw example scRNA-seq data matrix
In ChenWeiyan/LandSCENT: Landscape Single Cell Entropy
Description
Usage
Format
Details
References
Description
Raw example scRNA-seq data matrix of 50 human
embryonic stem cells(hESC) and 50 mesoderm progenitor cells(EC)
from Chu et al. 2016.
Usage
1
Format
A matrix with 19097 rows(genes) and 100 columns(cells)
Details
hESC : human embryonic stem cells(n=50)
EC : mesoderm progenitor cells(n=50)
References
Teschendorff AE, Tariq Enver.
Single-cell entropy for accurate estimation of differentiation
potency from a cell’s transcriptome.
Nature communications 8 (2017): 15599.
doi:
10.1038/ncomms15599.
Chu Li-Fang, Ning Leng, Jue Zhang, Zhonggang Hou, Daniel Mamott,
David T. Vereide, Jeea Choi, Christina Kendziorski, Ron Stewart and James A. Thomson
Single-cell RNA-seq reveals novel regulators of human embryonic
stem cell differentiation to definitive endoderm.
Genome biology 17.1 (2016): 173.
doi:
10.1186/s13059-016-1033-x.
ChenWeiyan/LandSCENT documentation built on Aug. 28, 2020, 9:55 p.m.
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Description Usage Format Details References
Description
Raw example scRNA-seq data matrix of 50 human embryonic stem cells(hESC) and 50 mesoderm progenitor cells(EC) from Chu et al. 2016.
Usage
1 |
Format
A matrix with 19097 rows(genes) and 100 columns(cells)
Details
hESC : human embryonic stem cells(n=50)
EC : mesoderm progenitor cells(n=50)
References
Teschendorff AE, Tariq Enver. Single-cell entropy for accurate estimation of differentiation potency from a cell’s transcriptome. Nature communications 8 (2017): 15599. doi: 10.1038/ncomms15599.
Chu Li-Fang, Ning Leng, Jue Zhang, Zhonggang Hou, Daniel Mamott, David T. Vereide, Jeea Choi, Christina Kendziorski, Ron Stewart and James A. Thomson Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm. Genome biology 17.1 (2016): 173. doi: 10.1186/s13059-016-1033-x.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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