Example.m: Normalized example scRNA-seq data matrix
In ChenWeiyan/LandSCENT: Landscape Single Cell Entropy

Description Usage Format Details References

Normalized example scRNA-seq data matrix of 50 human embryonic stem cells(hESC) and 50 mesoderm progenitor cells(EC) from Chu et al. 2016.

1	data(Example.m)

A matrix with 18935 rows and 100 columns

hESC : human embryonic stem cells(n=50)
EC : mesoderm progenitor cells(n=50)

Teschendorff AE, Tariq Enver. Single-cell entropy for accurate estimation of differentiation potency from a cell’s transcriptome. Nature communications 8 (2017): 15599. doi: 10.1038/ncomms15599.

Chu Li-Fang, Ning Leng, Jue Zhang, Zhonggang Hou, Daniel Mamott, David T. Vereide, Jeea Choi, Christina Kendziorski, Ron Stewart and James A. Thomson Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm. Genome biology 17.1 (2016): 173. doi: 10.1186/s13059-016-1033-x.

ChenWeiyan/LandSCENT documentation built on Aug. 28, 2020, 9:55 p.m.