Files in Aufiero/circRNAprofiler
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

NEWS.Rmd NEWS.md R/annotateBSJs.R R/annotateRepeats.R R/annotateSNPsGWAS.R R/checkProjectFolder.R R/data.R R/filterCirc.R R/formatGTF.R R/getBackSplicedJunctions.R R/getCircSeqs.R R/getDeseqRes.R R/getEdgerRes.R R/getMirSites.R R/getMotifs.R R/getPlots.R R/getRandomBSJunctions.R R/getRegexPattern.R R/getSeqsAcrossBSJs.R R/getSeqsFromGRs.R R/importFilesPredictionTool.R R/initCircRNAprofiler.R R/liftBSJcoords.R R/supportFunctions.R README.Rmd README.md

data/ahChainFiles.rda

data/ahRepeatMasker.rda

data/attractSpecies.rda

data/backSplicedJunctions.rda

data/gtf.rda

data/gwasTraits.rda

data/iupac.rda

data/memeDB.rda

data/mergedBSJunctions.rda

data/miRspeciesCodes.rda

inst/extdata/circexplorer2/circRNAs_001.txt

inst/extdata/circmarker/circRNAs_001.txt

inst/extdata/experiment.txt

inst/extdata/knife/circRNAs_001.txt

inst/extdata/mapsplice/circRNAs_001.txt

inst/extdata/miRs.txt

inst/extdata/nclscan/circRNAs_001.txt

inst/extdata/projectCirc/circmarker/circRNAs_001.txt

inst/extdata/projectCirc/circmarker/circRNAs_002.txt

inst/extdata/projectCirc/circmarker/circRNAs_003.txt

inst/extdata/projectCirc/circmarker/circRNAs_004.txt

inst/extdata/projectCirc/circmarker/circRNAs_005.txt

inst/extdata/projectCirc/circmarker/circRNAs_006.txt

inst/extdata/projectCirc/circmarker/circRNAs_007.txt

inst/extdata/projectCirc/circmarker/circRNAs_008.txt

inst/extdata/projectCirc/circmarker/circRNAs_009.txt

inst/extdata/projectCirc/experiment.txt

inst/extdata/projectCirc/mapsplice/circRNAs_001.txt

inst/extdata/projectCirc/mapsplice/circRNAs_002.txt

inst/extdata/projectCirc/mapsplice/circRNAs_003.txt

inst/extdata/projectCirc/mapsplice/circRNAs_004.txt

inst/extdata/projectCirc/mapsplice/circRNAs_005.txt

inst/extdata/projectCirc/mapsplice/circRNAs_006.txt

inst/extdata/projectCirc/mapsplice/circRNAs_007.txt

inst/extdata/projectCirc/mapsplice/circRNAs_008.txt

inst/extdata/projectCirc/mapsplice/circRNAs_009.txt

inst/extdata/projectCirc/miRs.txt

inst/extdata/projectCirc/motifs.txt

inst/extdata/projectCirc/nclscan/circRNAs_001.txt

inst/extdata/projectCirc/nclscan/circRNAs_002.txt

inst/extdata/projectCirc/nclscan/circRNAs_003.txt

inst/extdata/projectCirc/nclscan/circRNAs_004.txt

inst/extdata/projectCirc/nclscan/circRNAs_005.txt

inst/extdata/projectCirc/nclscan/circRNAs_006.txt

inst/extdata/projectCirc/nclscan/circRNAs_007.txt

inst/extdata/projectCirc/nclscan/circRNAs_008.txt

inst/extdata/projectCirc/nclscan/circRNAs_009.txt

inst/extdata/projectCirc/tool1/circRNAs_001.txt

inst/extdata/projectCirc/traits.txt

inst/extdata/projectCirc/transcripts.txt

inst/extdata/tool1/circRNAs_001.txt

inst/extdata/uroborus/circRNAs_001.txt

tests/testthat/testdata/GRCm38.92.gtf

tests/testthat/testdata/UCSCmm10.gtf

tests/testthat/testdata/experiment.txt

tests/testthat/testdata/gencode.v27.gtf

tests/testthat/testdata/gencodeVM16.gtf

tests/testthat/testdata/mapsplice/circRNAs_001.txt

tests/testthat/testdata/mapsplice/circRNAs_002.txt

tests/testthat/testdata/mapsplice/circRNAs_003.txt

tests/testthat/testdata/mapsplice/circRNAs_004.txt

tests/testthat/testdata/mapsplice/circRNAs_005.txt

tests/testthat/testdata/mapsplice/circRNAs_006.txt

tests/testthat/testdata/mature.fa

tests/testthat/testdata/miRs.txt

tests/testthat/testdata/motifs.txt

tests/testthat/testdata/ncbi38.gtf

tests/testthat/testdata/tool1/circRNAs_001.txt

tests/testthat/testdata/tool1/circRNAs_002.txt

tests/testthat/testdata/tool1/circRNAs_003.txt

tests/testthat/testdata/tool1/circRNAs_004.txt

tests/testthat/testdata/tool1/circRNAs_005.txt

tests/testthat/testdata/tool1/circRNAs_006.txt

tests/testthat/testdata/traits.txt

tests/testthat/testdata/transcripts.txt

vignettes/circRNAprofiler.Rmd

vignettes/circRNAprofiler.html

vignettes/circRNAs_test.txt

vignettes/experiment.txt

vignettes/images/image1.png

vignettes/images/image2.png

vignettes/images/image3.png

vignettes/images/image4.png

vignettes/miRs.txt

vignettes/motifs.txt

vignettes/references.bib

vignettes/render_toc.R

vignettes/traits.txt

vignettes/transcripts.txt

Aufiero/circRNAprofiler documentation built on Nov. 3, 2024, 10:12 a.m.

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Aufiero/circRNAprofiler
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

Files in Aufiero/circRNAprofiler
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

R Package Documentation

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Aufiero/circRNAprofiler circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

Files in Aufiero/circRNAprofiler circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

R Package Documentation

Browse R Packages

We want your feedback!

Aufiero/circRNAprofiler
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

Files in Aufiero/circRNAprofiler
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs