ahChainFiles: ahChainFile
In Aufiero/circRNAprofiler: circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs
ahChainFiles R Documentation
ahChainFile
Description
A data frame containing the AnnotationHub id related to the *.chain.gz file,
specific for each species and genome. The file name reflects the assembly
conversion data contained within in the format <db1>To<Db2>.over.chain.gz.
For example, a file named mm10ToHg19.over.chain.gz file contains the
liftOver data needed to convert mm10 (Mouse GRCm38) coordinates to hg19
(Human GRCh37).
Usage
data(ahChainFiles)
Format
A data frame with 1113 rows and 2 columns
- id
is the AnnotationHub id
- chainFile
is the *.chain.gz file
Examples
data(ahChainFiles)
Aufiero/circRNAprofiler documentation built on Nov. 3, 2024, 10:12 a.m.
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| ahChainFiles | R Documentation |
ahChainFile
Description
A data frame containing the AnnotationHub id related to the *.chain.gz file, specific for each species and genome. The file name reflects the assembly conversion data contained within in the format <db1>To<Db2>.over.chain.gz. For example, a file named mm10ToHg19.over.chain.gz file contains the liftOver data needed to convert mm10 (Mouse GRCm38) coordinates to hg19 (Human GRCh37).
Usage
data(ahChainFiles)
Format
A data frame with 1113 rows and 2 columns
- id
is the AnnotationHub id
- chainFile
is the *.chain.gz file
Examples
data(ahChainFiles)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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