kegg_enrichment_regions: Perform KEGG enrichment on a set of regions.

In ArnaudDroitLab/ef.utils: Eric Utilities

Description

Conveniance function. Regions are converted to genes with gene_from_regions using default parameters.

Usage

kegg_enrichment_regions(regions, annotations.list, ...)

Arguments

regions	A GRanges object with regions to enriched for KEGG pathways.
annotations.list	A list of annotation databases returned by select_annotations.
...	Parameters to be passed to kegg_enrichment.

Value

A vector of Entrez gene ids containing a non-redundant list of the genes represented by the given regions.

ArnaudDroitLab/ef.utils documentation built on Aug. 13, 2019, 9:09 p.m.